Installation

Users

We recommend using an new independent environment with python3.8, as used during development and testing of EpiK to minimize problems with dependencies. For instance, one can create and activate a new conda environment as follows:

$ conda create -n epik python=3.8
$ conda activate epik

EpiK is available in PyPI and installable through pip package manager:

$ pip install epik

Developers

You can also install the latest or specific versions from GitHub as follows:

$ git clone https://github.com/cmarti/epik.git

and install it in the current python environment:

$ cd epik
$ pip install .

Tests can be run with using pytest:

$ pytest test