Index

A

AdditiveKernel (class in epik.kernel)

C

ConnectednessKernel (class in epik.kernel)

E

encode_seqs() (in module epik.utils)

EpiK (class in epik.model) ExponentialKernel (class in epik.kernel)

F

fit() (epik.model.EpiK method) forward() (epik.kernel.AdditiveKernel method) (epik.kernel.ConnectednessKernel method) (epik.kernel.ExponentialKernel method) (epik.kernel.GeneralProductKernel method) (epik.kernel.JengaKernel method) (epik.kernel.PairwiseKernel method) (epik.kernel.VarianceComponentKernel method)

G

GeneralProductKernel (class in epik.kernel) get_delta() (epik.kernel.ConnectednessKernel method) (epik.kernel.GeneralProductKernel method) (epik.kernel.JengaKernel method)

get_mutation_delta() (epik.kernel.JengaKernel method)

J

JengaKernel (class in epik.kernel)

L

load() (epik.model.EpiK method)

M

make_contrasts() (epik.model.EpiK method)

P

PairwiseKernel (class in epik.kernel) predict() (epik.model.EpiK method)

predict_epistatic_coeffs() (epik.model.EpiK method) predict_mut_effects() (epik.model.EpiK method)

S

save() (epik.model.EpiK method) set_data() (epik.model.EpiK method)

simulate() (epik.model.EpiK method) split_training_test() (in module epik.utils)

V

VarianceComponentKernel (class in epik.kernel)